This only contains the code for the Truven claims database analysis. See https://narayanan.lab.uiowa.edu/article/datasets for animal models.
etl/find_bph_rx.rmd/html identifies and extracts users of TZ, DZ, AZ, and tamsulosinetl/bph_enrollments_demographics.rmd/html finds demographics and enrollment periods for usersetl/bph_reduce_enrollments.rmd/html reduces to index enrollment periodsetl/build_model_data.rmd/html builds the model data set using functions in etl/add_covariates_functions.Rmatching/estimate_propensity_scores.rmd/html estimates propensity scoresmatching/matches.rmd/html performs matching using matching/match.cpp to do the matching.analysis/balance.rmd/html checks for cohort balance before/after PS matchinganalysis/analysis.rmd/html performs the survival analysisanalysis/table_functions.R contains helper functions for the analysis